PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g006210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19905.8 Da    PI: 5.7161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g006210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.51.4e-0728511841
                      HHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF 18 ngilKKAeELSvLCdaevaviifs 41
                      + ++K A+ L +LC++ +a++ifs
  Sopen10g006210.1 28 KSLFKRANDLAILCGIHIAILIFS 51
                      689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.24E-102586IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.1942763IPR002100Transcription factor, MADS-box
PfamPF003194.2E-72853IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MESKNSNVDL ALAKEKRVEG AKIFQMQKSL FKRANDLAIL CGIHIAILIF SVGRQPIFFG  60
TPDEETVVQK FMEANHPTAP RFYMKMKKNE EENKEKGKSV EDNITHRQLE DFESPYLGSL  120
LKLYQGITEF EDLLNKEIDP TQLNQEIEKH VDPKIVSKMN VASSSYLPTD MLSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055398.11e-127PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4CYL52e-91K4CYL5_SOLLC; Uncharacterized protein
STRINGSolyc10g012390.1.15e-91(Solanum lycopersicum)
STRINGSolyc10g012380.1.15e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-09AGAMOUS-like 62